The vbs tools - vbs_ls, vbs_rm, vbs_fs - for listing, removing and mounting vbs and Mark6 format scattered VLBI recordings on FlexBuff and Mark6 systems
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README.md

VBS_FS

The vbsfs package consists of three utilities for dealing with scattered recorded VLBI data on FlexBuff, and since svn version r45 of July 2016, Mark6:

Tool Use for
vbs_ls lists all(some) vbs recordings on the system
vbs_rm remove (a) recording(s)
vbs_fs a FUSE virtual file system, presents each scattered recording as a single file, for use with standard UNIX tools

As of version r45 (27 July 2016) all utilities have been completely rewritten for use on either FlexBuff or Mark6 hardware and deal transparently with FlexBuff (vbs) and/or Mark6 recordings (dplane) even when mixed recording formats are present on the disks.

Installation instructions can be found later on in this document.

Basic operation (r45 and later)

All three tools scan a set of disks for known recordings. The command line arguments have been synchronized such that all tools share the disk selection mechanism and some helpful options:

--help       print detailed help for the utility
--version    print the actual version of the utility
-6           add Mark6 mountpoints to search path [/mnt/disks/*/*]
-v           add FlexBuff mountpoints to search path [/mnt/disk*]
-R <path>    add pattern <path> to search path
-I <pattern> index recording(s) matching <pattern> (r53 and later)

If the search path is not set from the command line, the FlexBuff pattern will be used.

Also new since r45 is that in vbs_ls and vbs_fs the owner, group and permissions metadata reflect the actual on disk owner, group and permissions.

vbs_ls and vbs_rm

vbs_ls and vbs_rm try to mimic their famous UNIX equivalents ls(1) and rm(1). As such vbs_ls and vbs_rm support many of the more pedestrian options that ls(1) and rm(1) offer.

As an example:

$> vbs_ls -lrth 

produces output equivalent to

$> ls -lrth

vbs_ls has an added -T option which yields totals per pattern given on the command line. Use this to e.g. find out the recorded size per experiment:

$> vbs_ls -lT gm082_ys_* n16l1_o8_*

or per station:

$> vbs_ls -lT *_ys_* *_o8_*

Note that on some shells it is necessary to escape the asterisk or else the shell will expand the file names (or set the “noglob” option in your shell if it supports that)

Use

    $> vbs_{fs,ls,rm} --help

for detailed information on command line options.

Output format of vbs_ls

Because vbs_ls now supports both dplane and vbs recordings, the output has been modified to reflect this. In the example below are shown some test recordings made on one of JIVE’s FlexBuffs in both dplane and vbs format:

verkout@flexbuf1:~$ vbs_ls -l haavee*
Found 4 recordings in 90 chunks,   57.68G
-rw-r--r-- jops      flexbuf      16797931200 Jun 22 10:27 haavee_m6_no0001
-rw-r--r-- jops      flexbuf      20981685600 Jun 22 10:28 haavee_m6_no0002
drw-r--r-- jops      flexbuf      13689999360 Jun 22 10:27 haavee_vbs_no0001
drw-r--r-- jops      flexbuf      10468823040 Jun 22 10:27 haavee_vbs_no0001a

Mark6/dplane recordings get type - (file) and EVN FlexBuff vbs recordings are listed as d, for directories. On disk that is also the distinction.

A file type of + means that the named recording was found in both vbs and dplane format. This could happen if a recording by the exact same name was made on two different disk packs and then mounted at the same time.

Or in this (synthetic) case - where vbs_ls is asked to aggregate (-T) all recordings matching the pattern haavee* - which fits both the vbs and dplane recordings shown previously:

verkout@flexbuf1:~$ vbs_ls -lTh haavee*
Found 3 recordings in 4503 chunks, 1.08T
+rw-r--r-- jops flexbuf 55.43G Jun 22 10:28 haavee* 90.00% recovered [81/90]

vbs_fs

vbs_fs is the FUSE file system. It will gather in memory the scattered recordings based on block sequence numbers. Basic usage:

$> mkdir /path/to/mountpoint
$> vbs_fs [options] /path/to/mountpoint

From this point on all recognized recordings found in the search path are presented as regular files in /path/to/mountpoint. Since r45 vbs_fs reassembles Mark6 dplane recordings as well.

Short use case

This is a description of how to run and, after use, unmount/stop the vbs_fs file system.

Running vbs_fs:

    # Create a mountpoint for the FUSE file system
    $> mkdir /path/to/mountpoint

    $> vbs_fs [-f] [-6] [-o allow_other] /path/to/mountpoint

    Where: 
        -f              run in foreground, do not daemonize (can ^C it)
        -6              monitor Mark6 mountpoints for vbs recordings
                       (Only available since 0.4.1)
        -o allow_other  other users may access the mounted files too

    Run `vbs_fs -h` to show all options.  Since r45 use `vbs_fs --help`
    to show all options and also refer to 'common command line options'
    above.

vbs_fs r45 and later gained extra command line options, affecting startup time and allow the user to balance memory usage with performance:

    --quick         perform a quick scan of the disks. Not all metadata
                    (size, access time) will be correct; a full scan is
                    expensive, which is the backward compatible default.

                    This option is mostly useful if it is known beforehand
                    which recording is to be opened (for e.g. correlation)
                    and a full scan of the disks is a waste of everyones
                    time.

                    The recording sizes will be set to 0 and a full scan of a
                    recording is done at the moment a recording is first
                    opened. This means that before a recording can be read
                    from, it must be opened at least once to trigger the
                    scan.

                    The use of touch(1) is useful for that.

    -n <int>        The readahead amount. `vbs_fs` is optimized for sequential
                    access and does readahead of `<n>` blocks. Use this option
                    to either limit the readahead (0 is a valid value and
                    also the default) or e.g. to the number of disks - this
                    keeps all disks spinning all the time.

                    Setting the read ahead amount to number of disks it
                    should be possible to reach read-back speeds of 1GB/s or
                    more; subject to number of disks, CPUs and memory
                    available - YMMV.

Unmounting of the mounted vbs_fs file system depends on how vbs_fs was run:

    * if started with the `-f` flag ('run in foreground') you can just `^C`
      the program and it will shut down correctly and unmount

    * otherwise it was daemonized - `vbs_fs` runs in the background. In such
      case the FUSE file system has to be unmounted. Use:

        $> fusermount -u /path/to/mountpoint

       to unmount the file system. The `vbs_fs` daemon program will exit.

Installation and compilation

  • Make sure libfuse-dev, make and g++ are installed, for the FUSE header file(s) and libraries.

  • Clone this repository and enter the directory

    $> git clone https://code.jive.eu/verkout/vbs_fs.git
    $> cd vbs_fs
    
    # Optionally select any branch (if any)
    $> git checkout <branch> 
    
  • Configure and build:

    # 'make install' will install `vbs_fs`, `vbs_ls` and `vbs_rm`
    # in PREFIX/bin. Use `./configure --help` to see defaults.
    $> ./configure [--prefix=PREFIX]
    
    # build and optionally install, if you want to do that right now
    $> make [install]
    
  • After configuring, the Makefile (created by the configure step) has two other useful make targets:

    Target Use for
    clean cleans the object files and binary/ies locally, does not remove the installed binary/ies
    uninstall This target is only available since 0.4.2 and - as the name suggests - does an uninstall of the installed binary/ies and configuration file(s)